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Refereed journal articles

  1. Fujita H., Yoshida S., Suzuki K., Toju H.., (2025).
    Alternative stable states of microbiome structure and soil ecosystem functions. Environmental Microbiome.
    DOI: 10.1186/s40793-025-00688-4
  2. Fujita H., Yoshida S., Suzuki K., Toju H.., (2024).
    Soil prokaryotic and fungal biome structures associated with crop disease status across the Japan Archipelago. mSphere.
    DOI: 10.1128/msphere.00803-23
  3. Hayashi I., Fujita H., Toju H.., (2024).
    Deterministic and stochastic processes generating alternative states of microbiomes. ISME Communications.
    DOI: 10.1093/ismeco/ycae007
  4. Fujita H., Ushio M., Suzuki K., Abe S. M., Yamamichi M., Okazaki Y., Canarini A., Hayashi I., Fukushima K., Fukuda S., Kiers E. T., Toju H.., (2023).
    Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2023.1261137
  5. Fujita H., Ushio M., Suzuki K., Abe S. M., Yamamichi M., Okazaki Y., Canarini A., Hayashi I., Fukushima K., Fukuda S., Kiers E. T., Toju H.., (2023).
    Facilitative interaction networks in experimental microbial community dynamics. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2023.1153952
  6. Yajima D., Fujita H., Hayashi I., Shima G., Suzuki K., Toju H.., (2023).
    Core species and interactions prominent in fish-associated microbiome dynamics. Microbiome.
    DOI: 10.1186/s40168-023-01498-x
  7. Fujita H., Ushio M., Suzuki K., Abe S. M., Yamamichi M., Iwayama K., Canarini A., Hayashi I., Fukushima K., Fukuda S., Kiers E. T., Toju H.., (2023).
    Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics. Microbiome.
    DOI: 10.1186/s40168-023-01474-5
  8. Hori Y., Fujita H., Hiruma K., Narisawa K., Toju H.., (2021).
    Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2021.713180
  9. Toju H., Abe M., Ishii C., Hori Y., Fujita H., Fukuda S.., (2020/06/25).
    Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2020.01361