Hiroaki Fujita's Website
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Refereed journal articles

  1. Fujita H., Yoshida S., Suzuki K., Toju H.., (2025).
    Alternative stable states of microbiome structure and soil ecosystem functions. Environmental Microbiome.
    DOI: 10.1186/s40793-025-00688-4
  2. Ikemoto M., Wada Y., Hashimoto K., Fujita H., Kyogoku D.., (2025).
    Where do “process-oriented” community ecologists go? In search of general laws that are just “good enough”. Ecological Research.
    DOI: https://doi.org/10.1111/1440-1703.70002
  3. Fujita H., Yoshida S., Suzuki K., Toju H.., (2024).
    Soil prokaryotic and fungal biome structures associated with crop disease status across the Japan Archipelago. mSphere.
    DOI: 10.1128/msphere.00803-23
  4. Hayashi I., Fujita H., Toju H.., (2024).
    Deterministic and stochastic processes generating alternative states of microbiomes. ISME Communications.
    DOI: 10.1093/ismeco/ycae007
  5. Fujita H., Ushio M., Suzuki K., Abe S. M., Yamamichi M., Okazaki Y., Canarini A., Hayashi I., Fukushima K., Fukuda S., Kiers E. T., Toju H.., (2023).
    Facilitative interaction networks in experimental microbial community dynamics. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2023.1153952
  6. Yajima D., Fujita H., Hayashi I., Shima G., Suzuki K., Toju H.., (2023).
    Core species and interactions prominent in fish-associated microbiome dynamics. Microbiome.
    DOI: 10.1186/s40168-023-01498-x
  7. Fujita H., Ushio M., Suzuki K., Abe S. M., Yamamichi M., Okazaki Y., Canarini A., Hayashi I., Fukushima K., Fukuda S., Kiers E. T., Toju H.., (2023).
    Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2023.1261137
  8. Fujita H., Ushio M., Suzuki K., Abe S. M., Yamamichi M., Iwayama K., Canarini A., Hayashi I., Fukushima K., Fukuda S., Kiers E. T., Toju H.., (2023).
    Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics. Microbiome.
    DOI: 10.1186/s40168-023-01474-5
  9. Hori Y., Fujita H., Hiruma K., Narisawa K., Toju H.., (2021).
    Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2021.713180
  10. Toju H., Abe M., Ishii C., Hori Y., Fujita H., Fukuda S.., (2020/06/25).
    Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes. Frontiers in Microbiology.
    DOI: 10.3389/fmicb.2020.01361